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239 Possible Causes for A, RNA, complex, location, plastid, plastid encoded, polymerase

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  • Plasmodium Falciparum

    Abstract The deadly malaria parasite Plasmodium falciparum contains a nonphotosynthetic plastid, known as the apicoplast, that functions to produce essential metabolites,[ncbi.nlm.nih.gov] […] the RNA targeted for translation regulation.[ncbi.nlm.nih.gov] Based on the per protocol analysis, the cure rate after use of artemether-lumefantrine was 98.2% (polymerase chain reaction corrected) and 97.01% (polymerase chain reaction[ncbi.nlm.nih.gov] The number of distinct malaria parasite haplotypes identified from an infected human host at a given time is referred to as the complexity of infection (COI).[ncbi.nlm.nih.gov] In order to mitigate these limitations, we have collected finger-prick blood samples from 2,333 malaria symptomatic individuals in nine states from 11 geographic locations[ncbi.nlm.nih.gov] K, Striepen B, Handman E, et al. (1998) Nuclear-encoded proteins target to the plastid in Toxoplasma gondii and Plasmodium falciparum.[doi.org] We investigated two mitochondrial genes (cytb and cox1), one plastid gene (tufA), and one nuclear gene (ldh) in blood samples from 12 chimpanzees and two gorillas from Cameroon[ncbi.nlm.nih.gov]

    Missing: A
  • Entamoeba Histolytica

    Entamoeba histolytica Inherited blast name: eukaryotes Rank: species Genetic code: Translation table 1 (Standard) Mitochondrial genetic code: Translation table 1 (Standard) Plastid[ncbi.nlm.nih.gov] Here, we follow-up with the study of EhCFIm25 to characterize its interaction with RNA.[ncbi.nlm.nih.gov] Here, we report development of a recombinase polymerase amplification (RPA) method to detect E. histolytica specifically.[ncbi.nlm.nih.gov] Abstract A limited outbreak of symptomatic intestinal and extraintestinal amoebiasis within a family complex is described.[ncbi.nlm.nih.gov] The elements were very frequently located close to protein-coding genes and other EhLINEs/SINEs.[ncbi.nlm.nih.gov] Genes encoding for all of the major components necessary for sulfate activation and transport of substrates and products across the mitosomal membrane are identifiable in[pnas.org] Accordingly, a concomitant reduction in the overall expression of the complex was observed.[ncbi.nlm.nih.gov]

    Missing: A
  • Polyploidy

    The difference between predicted plastid-targeted and predicted plastid-derived genes indicates that there is a probable overestimation by ab initio targeting prediction methods[doi.org] Our results indicate that a decrease in p53 RNA and protein levels, together with concomitant changes in the expression of other proteins such as p21WAF1, were involved in[ncbi.nlm.nih.gov] The protection from polyploidy conferred by Nampt was not associated with enhanced poly(ADP-ribose) polymerase-1 or sirtuin (SIRT) 2 activity, but with increased SIRT1 activity[ncbi.nlm.nih.gov] […] polyploidy, hybridization, and divergent allopatric species diversification, suggesting that this is an ideal group to investigate the evolutionary tempo of polyploidy and the complexities[ncbi.nlm.nih.gov] Phosphorylated MEK1/2 was aberrantly located within the nucleus of primary colorectal tumors and human colon cancer cells, and oncogenic activation of Ras was sufficient to[ncbi.nlm.nih.gov] […] is a recent duplication of the gene encoding plastid S13.[doi.org] The silencing of E2F-1 by RNA interference technology restored the function of mitotic checkpoint in core-expressing cells.[ncbi.nlm.nih.gov]

    Missing: A
  • Mycobacterium Tuberculosis

    […] synonym: Mycobacterium tuberculosis variant tuberculosis Inherited blast name: high GC Gram Rank: species Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid[ncbi.nlm.nih.gov] In spite of being one of our most prominent bacterial pathogens, the presence of small regulatory RNAs (sRNAs) has not previously been investigated in Mycobacterium tuberculosis[ncbi.nlm.nih.gov] The presence of multiple copies of the major replicative DNA polymerase (DnaE) in some organisms, including important pathogens and symbionts, has remained an unresolved enigma[ncbi.nlm.nih.gov] Updated phylogeny of the Mycobacterium tuberculosis complex based on the findings of Brosch et al. ( 2 ).[doi.org] Numerous efforts were made to locate the patient, including queries to shelters, jails, and infection-control staff members at local hospitals.[ncbi.nlm.nih.gov] SOS response , RNA Biology , 13 , 9 , (848) , (2016) .[doi.org] KEYWORDS: Eales’ disease; Hypersensitivity reaction; Mycobacterium tuberculosis; Polymerase chain reaction; Tuberculoprotein[ncbi.nlm.nih.gov]

    Missing: A plastid encoded
  • Treponema Denticola

    : Treponema denticola (ex Brumpt 1925) Chan et al. 1993 Inherited blast name: spirochetes Rank: species Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid[ncbi.nlm.nih.gov] RNA, Ribosomal, 16S Reactive Oxygen Species Succinimides[ncbi.nlm.nih.gov] […] between endodontic clinical signs and symptoms and the presence of Porphyromonas gingivalis, Treponema denticola, and Tannerella forsythia or their association by nested polymerase[ncbi.nlm.nih.gov] Bands corresponding to Msp and the PrtP protease complex proteins were absent in isogenic msp and protease complex mutants, respectively.[ncbi.nlm.nih.gov] The last assay used primers T7 (5′-TAATACGACTCACTATAGGG-3′), located in the vector, and ERMAMF, located in ermAM sequence (5′-CAGCGGAATGCTTTCATC-3′).[doi.org] Therefore, we developed a quantitative method for T. denticola that uses the TaqMan real-time polymerase chain reaction assay.[ncbi.nlm.nih.gov] The aim of this study was to investigate the presence of "red complex" in acute periradicular abscesses by real-time polymerase chain reaction (PCR) method.[ncbi.nlm.nih.gov]

    Missing: A plastid encoded
  • Coxiella Burnetii

    1948 type strain of Coxiella burnetii : ATCC:VR:615 Inherited blast name: g-proteobacteria Rank: species Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid[ncbi.nlm.nih.gov] We also demonstrate that Coxiella's 6S RNA interacts with RNA polymerase (RNAP) in a specific manner.[ncbi.nlm.nih.gov] Diagnosis was based on (18)fluorodeoxyglucose positron emission tomography, serology, broad-range polymerase chain reaction, and C. burnetii-specific polymerase chain reaction[ncbi.nlm.nih.gov] This research reveals that mitochondria are a bona fide target of Coxiella effectors and MceA is a complex-forming effector at the mitochondrial outer membrane during Coxiella[ncbi.nlm.nih.gov] ST16/26 was detected in locations with exposure to various animals and also in locations with no direct animal contact.[ncbi.nlm.nih.gov] Although it is possible that a common ancestor of C. burnetii (γ-proteobacteria), mitochondria (α-proteobacteria), and plastids (cyanobacteria) encoded this endonuclease and[pnas.org] Moreover, certain organelles found in eukaryotic cells, notably mitochondria and plastids, are the result of endosymbiosis.[elifesciences.org]

    Missing: A
  • Leishmania

    […] genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid) Lineage ( full ) cellular organisms ; Eukaryota ; Euglenozoa ; Kinetoplastida ; Trypanosomatidae[ncbi.nlm.nih.gov] Double-stranded RNA (dsRNA)-activated protein kinase R (PKR), a classic antiviral protein, is able to regulate a number of signaling pathways and macrophage functions.[ncbi.nlm.nih.gov] […] the RNA polymerase II largest subunit gene (RPOIILS) to infer a comprehensive phylogeny of Leishmania.[ncbi.nlm.nih.gov] We describe the induction of host cell autophagic machinery during acute natural bone marrow infection by L. donovani complex, detected by LC3B immunoblot.[ncbi.nlm.nih.gov] METHODOLOGY/PRINCIPAL FINDINGS: An entomological survey using CDC light traps was conducted between July and October of 2015 in four HL affected peri-urban locations in the[ncbi.nlm.nih.gov] The relationships of the Leishmania hertigi complex and the lizard Leishmania species to the main groups of mammalian Leishmania and Endotrypanum parasites were examined.[doi.org] A. ( 2000 ) Potential role of PKR in double-stranded RNA-induced macrophage activation.[dx.doi.org]

    Missing: A plastid encoded
  • Hepatitis E

    A truncated hepatitis E virus ORF2 protein expressed in tobacco plastids is immunogenic in mice . World J. Gastroenterol. 12 , 306–312 (2006). 64. Sehgal, D. , Malik, P.[doi.org] All patients with HEV RNA amplified in saliva had detectable HEV RNA in serum.[ncbi.nlm.nih.gov] Polymerase chain reaction-based methods are recommended for diagnosing hepatitis E infection in patients with compromised immunity.[ncbi.nlm.nih.gov] We demonstrated that GBF1 is likely required for the activity of HEV replication complexes.[ncbi.nlm.nih.gov] ORF2 is located at the 3'' end of the genome that encodes for a capsid protein, the principal structural protein.[web.archive.org] Similar engineering strategies can be employed with other macromolecular complexes with well-known atomic structures to explore potential applications in theranostic delivery[ncbi.nlm.nih.gov] Histopathology and polymerase chain reaction excluded tumours and the presence of common tumour-associated viruses.[ncbi.nlm.nih.gov]

    Missing: A plastid encoded
  • Promyelocytic Leukemia

    Hasegawa (2000) Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.[rdocumentation.org] The lncRNA functions were predicted through co‑expressed messenger RNA (mRNA) annotations.[ncbi.nlm.nih.gov] […] out by semi-quantitative reverse transcriptase polymerase chain reaction (RT-PCR).[ncbi.nlm.nih.gov] We observe reduced density and impaired integrity of nuclear pore complexes after ATRA and/or ATO exposure.[ncbi.nlm.nih.gov] The PML gene, or promyelocytic gene, is located on chromosome 15.[symptoma.com] In this study, the underlying cytotoxic mechanism of the [Ru(PPh₃)₂(Thy)(bipy)]PF₆ complex was assessed.[ncbi.nlm.nih.gov] Reverse-transcription polymerase chain reaction amplified the NPM1/RARA fusion transcripts derived from a combination of NPM1 exon 4 and RARA exon 5, or of NPM1 exon 1 and[ncbi.nlm.nih.gov]

    Missing: A
  • Burkholderia Cepacia

    Scientific name: Burkholderia cepacia complex Inherited blast name: b-proteobacteria Rank: species group Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid[ncbi.nlm.nih.gov] , Bacterial/classification RNA, Bacterial/genetics RNA, Ribosomal, 16S/classification RNA, Ribosomal, 16S/genetics Sensitivity and Specificity Substances DNA, Bacterial RNA[ncbi.nlm.nih.gov] Subsequent polymerase chain reaction restriction fragment length polymorphism analysis of the recA gene suggested the presence of B cepacia Genomovar V (Burkholderia vietnamiensis[ncbi.nlm.nih.gov] Ongoing research is aimed at gaining a better understanding of Burkholderia cepacia complex ecology, defining Burkholderia cepacia complex virulence factors and pathogenic[ncbi.nlm.nih.gov] To better locate the regions responsible for the key phenotypes, pC3 mutant derivatives of Burkholderia cenocepacia H111 carrying large deletions (up to 0.58 Mb) were constructed[ncbi.nlm.nih.gov] 5465 equivalent: Burkholderia cepacia genomovar I Inherited blast name: b-proteobacteria Rank: species Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid[ncbi.nlm.nih.gov] .: #20218] Marker Gene (DDBJ Direct submission) Burkholderia cepacia gene for DNA-directed RNA polymerase subunit D, partial cds, strain: ATCC 25416 AB190672 838 983594 *[bacdive.dsmz.de]

    Missing: A plastid encoded